PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn281921
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family B3
Protein Properties Length: 500aa    MW: 55419.3 Da    PI: 7.5492
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn281921genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B399.52e-31175279199
                 EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..E CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelv 93 
                 f+kv tpsdv+k++rlv+pk++ae++    ++ +e++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+  + +l+
  Achn281921 175 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSTNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGvGElGKDHLF 273
                 89***************************966778999*************************************************665889999999 PP

                 EEEE-S CS
          B3  94 vkvfrk 99 
                 + ++r+
  Achn281921 274 IDWRRR 279
                 999987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.8E-42170282IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.44E-29172281IPR015300DNA-binding pseudobarrel domain
CDDcd100172.74E-26173262No hitNo description
PfamPF023624.9E-29175279IPR003340B3 DNA binding domain
PROSITE profilePS5086314.522175280IPR003340B3 DNA binding domain
SMARTSM010194.4E-23175280IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MKSTISRRRG TSEHSFEWFL RCWCSFREVD LARGVGNWRA TANNRSMNFM AKSNSQGLYG  60
DDQNQNQNQD QSGSARGKFP FPSSLSNSSQ SYKSLVPDLT FQDHYHHHRP SQISRLELMD  120
ASPSALGNNS EEDPSPGAAD DDNNFRQGDW SSDGLRLAVG GSGSGGVGVE REHMFDKVVT  180
PSDVGKLNRL VIPKQHAEKY FPLDSSTNEK GLLLNFEDRN GKPWRFRYSY WNSSQSYVMT  240
KGWSRFVKEK KLDAGDIVSF QRGVGELGKD HLFIDWRRRP EAPELPQYFG SSNLPQHYLS  300
FHNHRSTAHH YPWSTSPLYL QPQSQPQHYS HFQNPNVTAY PYQSHYSGSS GTGPYGYNSV  360
VNPCSSSVIY LSSSSAGGQQ QQGGGMVQMQ SGGGGGGVED MPMVFESVPV VQGKAAAKRL  420
RLFGVNMDCP ISSESDECEM LSSTTTIMPH HSIMAAHPPY LSSTPIPPLQ LRLYNGSPLP  480
AIHSDIAKPS NKASFDLDI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-4517227911117DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011081336.11e-118PREDICTED: B3 domain-containing transcription factor NGA1-like
SwissprotO827992e-73NGA1_ARATH; B3 domain-containing transcription factor NGA1
TrEMBLF6HU981e-114F6HU98_VITVI; Putative uncharacterized protein
STRINGVIT_02s0025g03000.t011e-113(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28172350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.14e-70B3 family protein